PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g15280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 229aa    MW: 25236.8 Da    PI: 4.3143
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g15280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-081445131
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartm 31
                     +g+W++eEd +l+d++ q+G+g +W + ++++
   Vang04g15280.1 14 KGPWSPEEDAKLKDYIDQHGTGgNWIALPQKV 45
                     79********************9998877766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-10544IPR009057Homeodomain-like
SuperFamilySSF466891.17E-6850IPR009057Homeodomain-like
PROSITE profilePS500907.097950IPR017877Myb-like domain
PfamPF002491.9E-61445IPR001005SANT/Myb domain
CDDcd001677.40E-41652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYID QHGTGGNWIA LPQKVDVVHR FMHSNLDLVS  60
VSFLWWEDIF TGCSGNNSSA SADSFFQAQE SFMDPTQKGQ FKGSSSSGML VFGGEATATS  120
CSSSDASCNN QIRQIMEPEF GEASFVEQIG VADNPLYIGV ENTTNKLMMF SSGGSASVSG  180
WTDKQNGLWE QNPLDYSLEE IKQLISTNNS FNNFLFDDKK TEERFTYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162775.14e-84hypothetical protein PHAVU_001G179400g
TrEMBLA0A0S3RYT21e-97A0A0S3RYT2_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TF981e-97A0A0L9TF98_PHAAN; Uncharacterized protein
STRINGGLYMA19G36830.13e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-25myb domain protein 36